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DR. SHILPA TOMAR
Name : DR. SHILPA TOMAR
Designation : Scientist C
Division : Basic Immunology & Technology Development
Email ID : [email protected]
Area Of Interest : Viral hepatitis, outbreak investigation, acute hepatitis of unknown origin (AHUO), direct acting antivirals (DAA) drug resistance
Completed and Ongoing Projects

Title of the Study

Role

Duration

Funding Agency

Status

1. Assessment of risk factors for the development of Cardiovascular disease(CVD) in patients with active HCV infection

 

PI

3 years

ICMR Extramural

Completed

2. Japanese Encephalitis Epidemiology in Central Part of India: Enhanced Sentinel Surveillance for Etiological Contribution and Burden following Vaccination in Maharashtra and Telangana

 

 

Co-PI

2.5 years

ICMR Extramural

Completed

3. Surveillance of Antimicrobial Resistance at Animal Human Interface in the Context of One Health

 

Co-PI

3 years

ICMR Extramural

Completed

4. Epidemiological study on Q fever and development of cost effective diagnostics for Coxiellosis in human and animals

Co-PI

3 years

ICMR Extramural

Completed

 

 

5. Complete transcriptome analysis of cells in throat/nasal swabs of COVID-19 patients in India

Co-PI

2 years

ICMR-NIV Intramural

Completed

 

6. Seroprevalence of Dengue and Chikungunya Virus Infections in Western India: A Retrospective and Prospective Cross-sectional study

Co-PI

1 year

ICMR-NIV Intramural

Completed

6. Integrating HCV Care: Screening, Diagnosis, and Treatment of Hepatitis C in the Pune District, India'

Co-PI

2 years

ICMR Intramural

Ongoing

7. Breaking Barriers: Piloting a Decentralised Hepatitis C Care Model for Rapid Diagnosis and Treatment in high burden states of India.’ 

 

                                                                      

Co-PI

2 years

ICMR Intramural

Ongoing

8. Development of lateral flow based rapid immunochromatographic point-of-care assays for diagnosis of viral diseases of public health importance Component A (Hepatitis A and E diagnosis) Component B (KFD diagnosis)

PI: Dr. T. M. Deshmukh

Co-PI

3 years

ICMR Intramural

Ongoing

9. Molecular characterization of hepatitis viruses from clinical samples, either referred for diagnosis or collected during outbreak investigation

PI: Dr. K. S. Lole

 

Co-PI

3 years

ICMR-NIV Intramural

Service

10. Vaccine Seroepidemiology Network (VacSeNe): Integrating Immunoepidemiology in Disease Surveillance and Immunization Programmes for Achieving Disease Elimination Goals in India

PI: BV Tandale

Co-PI

3 years

ICMR Intramural

Ongoing

Awards and Honours
  1. Invited as a Special guest of the conference on "Prevention, Diagnosis and Treatment for Hepatitis" organised by Illness To Wellness Foundation (ITWF) on occasion of World Hepatitis Day on 28th July 2025, New Delhi. Presented in "Barriers and Solutions to Hepatitis Elimination" session, followed by panel discussion.
  2. Selected as member of Implementation research (IR) teams of ICMR by Hon'ble DG, ICMR, March 2023
  3. Invited as Guest speaker at National CME “Hepatitis B – Mitigation and working towards elimination” on the occasion of World Hepatitis day held at AIIMS Bibinagar, Hyderabad on 28th July 2021
  4. Women Warriors of ICMR Women scientists leading India’s fight against COVID-19’: E-Samvad Patrika of ICMR, March 2021
  5. Exemplary services during SARS-CoV-2 Pandemic from Director ICMR-NIV, Pune: Certificate of appreciation, 5th February 2021
  6. Guest lecture: CME on COVID-19 organized by the Vidarbha Association of Medical Microbiologists (VAMM) on "Laboratory diagnosis of COVID-19 with special reference to Neuro COVID", 8th August 2020
  7. Speaker on All India Radio(AIR), New Delhi broadcast on novel coronavirus(nCoV) Precautions, 26th February 2020
  8. Nominated as Member of Central Team of experts to Udhampur, Jammu & Kashmir to investigate pediatric deaths due to unknown etiology constituted by the Emergency Medical Relief (EMR), Ministry of Health and Family Welfare, Govt. of India, January 2020
  9. Guest lecture in CME on “Acute Encephalitis Syndrome and Vector Borne Diseases”, organized by MGIMS, Sevagram, 1st June, 2019
  10. Won First prize in Oral Presentation on “Zika virus outbreak in Jaipur, Rajasthan: Experience during response”: CME on “Outbreak Management” at KEM, Hospital organized by Hospital Infection Society –Mumbai Forum on 16th February 2019
  11. Invited as Judge for Poster presentation (Medical) in the 27th International Conference Of Virology (INTERVIROCON 2018) under the aegis of Indian Virological Society (IVS), New Delhi from 12th to 14th November 2018 at PGIMER, Chandigarh
  12. Nominated as High Level Central Team Member: Zika virus outbreak at Jaipur, Rajasthan, September 2018
  13. Nominated as member of Central team for Nipah virus outbreak at Kozhikode, Kerala (June, 2018) by Emergency Medical Relief (EMR) Division of the Directorate General of Health Services, Govt. of India
Work Experience

Educational qualifications: MBBS, MD Microbiology, PGD Epidemiology

Work Experience

Post Held

Employer

Duration

09.09.2025 – Till Date

Scientist C

ICMR-National Institute of Translational Virology and AIDS Research (NITVAR), Pune

3 months, 10 days

01.09.2022 – 08.09.2025

Scientist C

Hepatitis, ICMR-National Institute of Virology (NIV), Pune

3 years, 7 days

13.12.2019 – 31.08.2022

Scientist B

Hepatitis, ICMR-National Institute of Virology (NIV), Pune

2 years, 8 months

28.7.2017 – 12.12.2019

Scientist B

Epidemiology, ICMR-National Institute of Virology (NIV), Pune

2 years, 4 months

23.1.2017 – 27.7.2017

Scientist B

Medicine, ICMR-National Institute of Occupational Health (NIOH), Occupational Health (NIOH),

6 months, 4 days

01.3.2016 – 17.1.2017

Demonstrator

Microbiology, D.Y. Patil Medical College, Pune

10 months, 16 days

07.7.2014- 31.9.2015

Research Scientist-B

ICMR-National AIDS Research Institute (N.A.R.I),Pune

1 year, 2 months, 23 days

List of Grant Recieved

Title of Project

Role

Duration

Funding Agency

1. Assessment of risk factors for the development of Cardiovascular disease(CVD) in patients with active HCV infection

 

PI

3 years

ICMR Extramural

2. Japanese Encephalitis Epidemiology in Central Part of India: Enhanced Sentinel Surveillance for Etiological Contribution and Burden following Vaccination in Maharashtra and Telangana

Co-PI

2.5 years

ICMR Extramural

3. Surveillance of Antimicrobial Resistance at Animal Human Interface in the Context of One Health

Co-PI

3 years

ICMR Extramural

4. Epidemiological study on Q fever and development of cost effective diagnostics for Coxiellosis in human and animals

Co-PI

3 years

ICMR Extramural

5. Complete transcriptome analysis of cells in throat/nasal swabs of COVID-19 patients in India

Co-PI

2 years

ICMR-NIV Intramural

6. Seroprevalence of Dengue and Chikungunya Virus Infections in Western India: A Retrospective and Prospective Cross-sectional study

Co-PI

1 year

ICMR-NIV Intramural

6. Integrating HCV Care: Screening, Diagnosis, and Treatment of Hepatitis C in the Pune District, India'

Co-PI

2 years

ICMR Intramural

7. Breaking Barriers: Piloting a Decentralised Hepatitis C Care Model for Rapid Diagnosis and Treatment in high burden states of India.’ 

Co-PI

2 years

ICMR Intramural

8. Development of lateral flow based rapid immunochromatographic point-of-care assays for diagnosis of viral diseases of public health importance Component A (Hepatitis A and E diagnosis) Component B (KFD diagnosis)

PI: Dr. T. M. Deshmukh

Co-PI

3 years

ICMR Intramural

9. Molecular characterization of hepatitis viruses from clinical samples, either referred for diagnosis or collected during outbreak investigation

PI: Dr. K. S. Lole

Co-PI

3 years

ICMR-NIV Intramural

10. Vaccine Seroepidemiology Network (VacSeNe): Integrating Immunoepidemiology in Disease Surveillance and Immunization Programmes for Achieving Disease Elimination Goals in India PI: BV Tandale

Co-PI

3 years

ICMR Intramural

 

Conference/Training/Workshop Attended
  1. 13th International Conference on Health and Hepatitis in Substance Users, held from October 14-17, 2025: Presented her research work on: "Whole Genome Sequencing and Drug Resistance analysis of ‘Unusual’ Hepatitis C subtypes 6xa and a 3b relapse Case: A study on Intravenous Drug-Users On Direct-Acting Antiviral (DAA) Treatment, India
  2. Hands-on Basic flow cytometry course at BD–NCBS Centre of Excellence in Flow Cytometry, 22nd to 24th April 2025 at NCBS-TIFR, Bengaluru
  3. Implementation Research Workshop, 6th to 8th September 2023 at ICMR- NIIRNCD, Jodhpur
  4. Training programme on “Viral Hepatitis”, 21st – 22nd February, 2023, Institute of Liver & Biliary Sciences (ILBS), New Delhi
  5. 4-day Training Programme on ''LQMS and Internal Audit as per IS/ISO/IEC 17025:2017", 21st to 24th November 2022, National Institute of Training for Standardization (NITS), Bureau of Indian Standards (BIS), NOIDA
  6. Workshop on Health Technology Assessment (HTA), 28th July 2025, ICMR-NIV, Pune
  7. 8th Training Programme on “Science and Technology for Rural Societies for Women Scientist & Technologists”, 25th to 29th November 2019, Indian Institute of Public Administration (IIPA), New Delhi, sponsored by DST
  8. Training workshop on “Ethical Guidance for Biomedical Research”, 17th – 18th January 2019, ICMR-National AIDS Research Institute(NARI), Pune
  9. Capacity building workshop on “Risk communication during Public Health Emergencies”, 14th – 15th May 2018, Organized by National Centre for Disease Control (NCDC), in collaboration with World Health organization (WHO), Country Office for India at Shimla
  10. Training Program on “Basic Epidemiology and Biostatistics”, 9th – 20th April 2018, ICMR-National Institute of Epidemiology(NIE), Chennai
  11. Public Health Dynamics Workshop (PHD 2018), 5th – 7th March 2018, ICMR headquarters, New Delhi (Public Health Dynamics Laboratory, University of Pittsburgh Graduate School of Public Health)
Number of Publications : 18
List of Publications
  1. Tandale BV, Khude PM, Deshmukh PS, Qazi MS, Padmaja GV, Narang R, Deshmukh PR, Rajderkar SS, Tomar SJ, Bondre VP, et al; Japanese Encephalitis Epidemiology in Central India Study Group. Epidemiology of Japanese encephalitis in Central India after implementing immunization. J Pediatr Infect Dis. 2024. doi:10.1055/s-0044-1785490
  2. Alagarasu K, Tomar SJ, Patil J, Bachal R, More R, Bote M, Kakade M, Venkatesh V, Parashar D, Tandale BV. Seroprevalence of dengue virus infection in Pune City in India, 2019: a decadal change. J Infect Public Health. 2023;16(11):1830-1836. doi:10.1016/j.jiph.2023.08.020
  3. Tandale BV, Narang R, Kumar GV, Jain M, Tomar SJ, Deshmukh PS. Infectious causes of acute encephalitis syndrome in India: decadal change and the way forward. Indian Pediatr. 2023. PMID:37260063
  4. Tandale BV, Deshmukh PS, Tomar SJ, Narang R, Qazi MS, Padmaja GV, Jain M, Jain D, Guduru VK, Jain J, et al. Incidence of Japanese encephalitis and acute encephalitis syndrome hospitalizations in the medium-endemic region in Central India. J Epidemiol Glob Health. 2023. doi:10.1007/s44197-023-00110-7
  5. Itihas A, Jategaonkar S, Jain M, Narang R, Chauhan V, Tandale BV, Tomar SJ. Comparison of clinical profile and outcomes of Japanese encephalitis and acute encephalitis syndrome among rural children. Indian J Pediatr. 2023. doi:10.1007/s12098-022-04424-5
  6. Tandale BV, Khude PM, Deshmukh PS, Narang R, Qazi MS, Padmaja GV, Jain M, Jain D, Guduru VK, Deshmukh PR, et al; Japanese Encephalitis Epidemiology Study Group (Tomar SJ). Effectiveness of Japanese encephalitis vaccination among children in Central India. J Med Virol. 2023;95(1):e28399. doi:10.1002/jmv.28399
  7. Tandale BV, Deshmukh PS, Narang R, Qazi MS, Padmaja GV, Deshmukh PR, Raut AV, Narlawar UW, Jha PK, Rajderkar SS; Japanese Encephalitis Epidemiology Study Group (Tomar SJ). Coverage of Japanese encephalitis routine vaccination among children in Central India. J Med Virol. 2022. doi:10.1002/jmv.28155
  8. Tomar SJ, Alagarasu K, More A, Nadkarni M, Bachal R, Bote M, Patil J, Venkatesh V, Parashar D, Tandale BV. Decadal change in seroprevalence of chikungunya virus infection in Pune City, India. Viruses. 2022;14(5):998. doi:10.3390/v14050998
  9. Alagarasu K, Potdar VA, Vipat V, Hundekar S, Gunjikar R, Choudhary ML, Abraham P, Lole KS; NIC Team (Tomar SJ). Utility of a modified heat inactivation method for direct detection of SARS-CoV-2 by RT-qPCR bypassing RNA extraction. Indian J Med Res. 2020;152(1-2):108-110. doi:10.4103/ijmr.IJMR_3121_20
  10. Potdar V, Choudhary ML, Bhardwaj S, Ghuge R, Sugunan AP, Gurav Y, Yadav PD, Shete A, Tomar SJ, Anukumar B, et al. Respiratory virus detection among overseas returnees during the early phase of the COVID-19 pandemic in India. Indian J Med Res. 2020;151(5):486-489. doi:10.4103/ijmr.IJMR_638_20
  11. Potdar V, Cherian SS, Deshpande GR, et al; NIC Team (Tomar SJ). Genomic analysis of SARS-CoV-2 strains among Indians returning from Italy, Iran, and China, and Italian tourists in India. Indian J Med Res. 2020;151(2-3):255-260. doi:10.4103/ijmr.IJMR_1058_20
  12. Alagarasu K, Choudhary ML, Lole KS, Abraham P, Potdar V; NIC Team (Tomar SJ). Evaluation of RdRp and ORF1b-nsp14-based real-time RT-PCR assays for confirmation of SARS-CoV-2 infection. Indian J Med Res. 2020;151(5):483-485. doi:10.4103/ijmr.IJMR_1256_20
  13. Tandale BV, Tomar SJ, Bondre VP, Sapkal GN, Damle RG, Narang R, Qazi MS, Padmaja GV, Jain M, Jain D, et al; Infectious Encephalitis Aetiologies Study Group. Infectious causes of acute encephalitis syndrome hospitalizations in Central India, 2018–2020. J Clin Virol. 2022;152:105194. doi:10.1016/j.jcv.2022.105194
  14. Tomar SJ, Thomson BG, Kanitkar SA, Bondre VP. HSV-2 meningitis in a young woman presenting with acute tonsillitis. Ann Indian Acad Neurol. 2023. doi:10.4103/aian.aian_425_22
  15. Tomar SJ, Lodha R, Das B, Sood S, Kapil A. Risk factors for central line–associated bloodstream infections. Indian Pediatr. 2016;53(9):790-792. doi:10.1007/s13312-016-0932-y
  16. Tomar SJ, Lodha R, Das B, Kapil A. Hand hygiene compliance of healthcare workers in a pediatric intensive care unit. Indian Pediatr. 2015;52(7):620-621.
  17. Tomar SJ, Lodha R, Sreenivas V, Das B, Sood S, Kapil A. Incidence and risk factors for central line–associated bloodstream infections in a pediatric ICU. J Patient Saf Infect Control. 2015;3(2):106-107. doi:10.1016/j.jpsic.2015.10.173
  18. Tomar SJ, Lodha R, Das B, Sood S, Kapil A. Central line–associated bloodstream infections: microbiology and antimicrobial resistance pattern in a pediatric ICU. Clin Epidemiol Glob Health. 2015;3(suppl):S16-S19. doi:10.1016/j.cegh.2015.10.008

Book Chapters: 05

  1. Teja KB, Bhagavatula S, Bhatta A, Tomar SJ. Hepatitis C virus infection: current trends in host–pathogen interactions, diagnostics, and treatment. In: Bhukya PL, Subbaiyan A, eds. Emerging Human Viral Diseases. Vol II. Springer; 2024. doi:10.1007/978-981-97-4480-0_20
  2. Bhatta A, Sahoo S, Teja KB, Tomar SJ. Middle East respiratory syndrome coronavirus (MERS-CoV). In: Bhukya PL, Mhaske ST, Sonkar SC, eds. Emerging Human Viral Diseases. Vol I. Springer; 2023. doi:10.1007/978-981-99-2820-0_6
  3. Akshay PS, Veena SM, Teja KB, Tomar SJ. Severe acute respiratory syndrome–associated coronavirus (SARS-CoV). In: Bhukya PL, Mhaske ST, Sonkar SC, eds. Emerging Human Viral Diseases. Vol I. Springer; 2023. doi:10.1007/978-981-99-2820-0_5
  4. Tomar SJ, Cherian S, Abraham P. Understanding the virus. In: COVID-19 Pandemic (History, Science & Society). Ministry of Information and Broadcasting, Government of India; 2021. ISBN:978-93-5409-175-9
  5. Chowdhury PK, Shilpa Tomar, Mandal T. Changing epidemiology of dengue in Southeast Asia. In: Dengue. 2nd ed. New Delhi, India: Jaypee Brothers Medical Publishers; 2019:20–26. ISBN: 978-93-5270-672-3.